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Article #72How to use embl2ace?
From: Kate Gendall
Date: Thu, 02 Oct 2003 08:18
Date: Thu, 02 Oct 2003 08:18
7 lines
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3058 bytes
I have an emsembl file that I want to convert to an ACeDB database. I have the embl2ace programme, and a copy of macperl, which I think I need to run it. However, I'm not really sure what to do now. I don't know anything about perl or programming in general. I assume I need to let the programme know the name of the ensembl file to use, but I'm not sure how to do that. Can anyone help? ---
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X-Google-Language: ENGLISH,ASCII-7-bit X-Google-Thread: f6d40,83add4bcc563d7a0,start X-Google-Attributes: gidf6d40,public X-Google-ArrivalTime: 2003-10-02 01:18:56 PST Path: arc1-ca.pugleaf.net!archiver1.google.com!news2.google.com!newsfeed.stanford.edu!nntp.cs.ubc.ca!skynet.be!skynet.be!peer.news.eu-x.com!server2.netnews.ja.net!hgmp.mrc.ac.uk!net.bio.net From: genka513@student.otago.ac.nz (Kate Gendall) Newsgroups: bionet.software.acedb Subject: How to use embl2ace? Date: 2 Oct 2003 09:18:54 +0100 Organization: BIOSCI/MRC Human Genome Mapping Project Resource Centre Lines: 8 Sender: mod-ace@hgmp.mrc.ac.uk Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net> Message-ID: <1065060002.3f7b86a230db1@www.studentmail.otago.ac.nz> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=ISO-8859-1 Content-Transfer-Encoding: 8bit X-Trace: niobium.hgmp.mrc.ac.uk 1065082734 10030 193.62.192.80 (2 Oct 2003 08:18:54 GMT) X-Complaints-To: news@net.bio.net NNTP-Posting-Date: Thu, 2 Oct 2003 08:18:54 +0000 (UTC) X-Original-To: bionet-software-acedb@net.bio.net X-Original-To: acedb@net.bio.net X-Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 7A6327D17A for <acedb@net.bio.net>; Thu, 2 Oct 2003 02:50:06 +0100 (BST) X-Received: from mailhub1.otago.ac.nz (mailhub1.otago.ac.nz [139.80.64.218]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 753D27D142 for <acedb@net.bio.net>; Thu, 2 Oct 2003 02:50:03 +0100 (BST) X-Received: (from root@localhost) by mailhub1.otago.ac.nz (8.12.9/8.12.9) id h921o2jv012872 for acedb@net.bio.net; Thu, 2 Oct 2003 13:50:02 +1200 X-Received: from ungol.otago.ac.nz (ungol.otago.ac.nz [139.80.64.85]) by mailhub1.otago.ac.nz (8.12.9/8.12.9) with ESMTP id h921o2fm012846 for <acedb@net.bio.net>; Thu, 2 Oct 2003 13:50:02 +1200 X-Received: (from apache@localhost) by ungol.otago.ac.nz (8.11.6/8.11.6) id h92202Y06851 for acedb@net.bio.net; Thu, 2 Oct 2003 14:00:02 +1200 X-Received: from ou003018.otago.ac.nz (ou003018.otago.ac.nz [139.80.3.18]) by www.studentmail.otago.ac.nz (IMP) with HTTP for <genka513@studentmail.otago.ac.nz>; Thu, 2 Oct 2003 14:00:02 +1200 X-To: acedb@net.bio.net X-User-Agent: Internet Messaging Program (IMP) 3.2.2-cvs X-Originating-IP: 139.80.3.18 X-scanner: scanned by Inflex 1.0.12.7 X-Auth: PGPMoose V1.1 PGP bionet.software.acedb iQCVAwUAP3vfbaCIqsWvyF5FAQHkRQP7BGzy5nwLE0UwKINFy2c9JoewpZO5j6AD W/1hXhC02DEdNbQsvOT2RLyG85cvvNoZcME9hpwVb/BondOXNrkZpwUMT65kIZ+u 6s08hgenAN5zACXyNAFLdBHvCdYQEa2qU9UgRcE1eioF3Gdp0tm5bujTtYmyvEDH 7MybgljNFg8= =r/cb