Re: How to use embl2ace?

Article View: bionet.software.acedb

Article #73

Back to bionet.software.acedb Previous Next

#73

From: Ed Griffiths
Date: Thu, 02 Oct 2003 08:29

25 lines
2539 bytes

Kate,

> 
> I have an emsembl file that I want to convert to an ACeDB database. I have
> the embl2ace programme, and a copy of macperl, which I think I need to run
> it. However, I'm not really sure what to do now. I don't know anything
> about perl or programming in general. I assume I need to let the programme
> know the name of the ensembl file to use, but I'm not sure how to do that.
> Can anyone help?

I think you may be getting muddled up with "Ensemble" and "Embl". It sounds like
you have a file retrieved from and ensemble system but you have got hold of a
program that converts Embl -> Ace.

Can you clarify please ?

Ed
-- 
 ------------------------------------------------------------------------
| Ed Griffiths, Acedb development, Informatics Group,                    |
|        Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus,  |
|               Hinxton, Cambridge CB10 1SA, UK                          |
|                                                                        |
| email: edgrif@sanger.ac.uk  Tel: +44-1223-494780  Fax: +44-1223-494919 |
 ------------------------------------------------------------------------

Technical Details

Message-ID: <3F7BE1C8.530C7F30@sanger.ac.uk>

Path:

arc1-ca.pugleaf.net!archiver1.google.com!news2.google.com!newsfeed.stanford.edu!bloom-beacon.mit.edu!hgmp.mrc.ac.uk!net.bio.net

References: <1065060002.3f7b86a230db1@www.studentmail.otago.ac.nz>

Show Full Headers

Complete Article Headers

X-Google-Language: ENGLISH,ASCII-7-bit
X-Google-Thread: f6d40,83add4bcc563d7a0
X-Google-Attributes: gidf6d40,public
X-Google-ArrivalTime: 2003-10-02 01:29:06 PST
Path: arc1-ca.pugleaf.net!archiver1.google.com!news2.google.com!newsfeed.stanford.edu!bloom-beacon.mit.edu!hgmp.mrc.ac.uk!net.bio.net
From: Ed Griffiths <edgrif@sanger.ac.uk>
Newsgroups: bionet.software.acedb
Subject: Re: How to use embl2ace?
Date: 2 Oct 2003 09:29:05 +0100
Organization: Sanger Institute
Lines: 26
Sender: mod-ace@hgmp.mrc.ac.uk
Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net>
Message-ID: <3F7BE1C8.530C7F30@sanger.ac.uk>
References: <1065060002.3f7b86a230db1@www.studentmail.otago.ac.nz>
NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk
Mime-Version:  1.0
Content-Type:  text/plain; charset=us-ascii
Content-Transfer-Encoding:  7bit
X-Trace: niobium.hgmp.mrc.ac.uk 1065083346 10282 193.62.192.80 (2 Oct 2003 08:29:06 GMT)
X-Complaints-To: news@net.bio.net
NNTP-Posting-Date: Thu, 2 Oct 2003 08:29:06 +0000 (UTC)
X-Original-To: bionet-software-acedb@net.bio.net
X-Accept-Language: en
X-Auth: PGPMoose V1.1 PGP bionet.software.acedb
 iQCVAwUAP3vh0KCIqsWvyF5FAQEDKwQAoNAfBm4g/cuy8ztNMNMXHlFetlsNIqvq
 HTC/V5nckNsdV4h+mkYlzAVgIB/dcXS2ou5o6Sl3WdNHJE62afVl7l9ktSjEyKD8
 0uyusW5DJ85B9LXIcmRGzw80TSuKCeH1k1YmqqTuGh36rA7+BEF2aEnaliPEeSPQ
 J/VGcS7bPo0=
 =1tUT

Reply to Parent Message