[Q] Codon Bias calculation program?

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Article #2271

#2271

From: poehlmann
Date: Wed, 24 Aug 1994 14:22

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Colleagues, 

I need to compile a codon bias for a given sequence. I do have own 
codon usage tables for my system (prepared with 'codonfrequency' from
the GCG package), and the one for the sequences in question. Can 
anyone recommend a method within GCG, or any other PD (?) package, 
which gets me a single codon bias value for a defined reading frame? 
(This is, not the 'randomized' versus 'real' sequence but the 'real 
usage' versus the 'expected' usage). 


Thanks, 
Rainer

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From: poehlmann@urz.unibas.ch
Newsgroups: bionet.software,bionet.software.gcg
Subject: [Q] Codon Bias calculation program?
Message-ID: <1994Aug24.152236.43958@yogi>
Date: 24 Aug 94 15:22:36 MET
Organization: University of Basel, Switzerland
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