GCG: distances changing gap weights

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Article #2272

#2272

From: Neal Dalton
Date: Fri, 26 Aug 1994 19:49

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We would like to change the weight given to gaps vs nucleotides when
calculating distances using GCG's distance program.  Currently, gap
mismatches are given the same weight as nucleotide mismatches.

How can we do this?  I tried to add gaps to the dnadistances.cmp table,
but that didn't seem to work.

Also, are there other program for this?

Neal

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From: nrd@insitu.med.umn.edu (Neal Dalton)
Subject: GCG: distances changing gap weights
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Date: Fri, 26 Aug 1994 19:49:53 GMT
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