Problem facing at writing a script to run multi-fasta sequence in fgenesh

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Article #2341

#2341

From: Chia Jing Yi
Date: Thu, 10 Dec 2009 09:52

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Hi,

I just try to write a script to allow fgenesh to run multi-fasta sequence.
Unfortunately I faced the problem when I writing it :(
My purpose is tried to write a script that allows the following command
worked perfectly:
./script_for_multi_fasta Program Par_file Seq_file <Other options>
eg.
./run_program.pl fgenesh Human fileseq -pmrna > fileres
Thanks a lot for any suggestion and advice.

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From: Chia Jing Yi <cjyxiaodi1@gmail.com>
Newsgroups: bionet.software
Subject: Problem facing at writing a script to run multi-fasta sequence in 
 fgenesh
Date: Thu, 10 Dec 2009 17:52:12 +0800
Organization: BIOSCI/IUBio, Biology Dept., Indiana University
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